Index

A

add_noise() (in module modify) analyze (module) as_ndarray_2D() (in module ga_analyze)

as_ndarray_3D() (in module ga_analyze) average_domain_size() (in module ga_analyze)

B

bandXY() (in module surface) bandXZ() (in module surface) bandYZ() (in module surface) BarPlot (class in plot) blend_and_threshold() (in module modify)

block (module) bottleneck_distribution() (in module ga_analyze) box_counting_dimension() (in module ga_analyze) brute() (fit.Fit method)

C

calc() (surface.WaveDimensions method) calculate (module) calculate() (in module analyze) (ivcurve.IVCurveSolar method) CheckPoint (class in checkpoint) checkpoint (module) chk() (in module find) chk2csv (module) chk2vtk (module) chks() (in module find) clear() (checkpoint.CheckPoint method) closing() (in module modify) ColorCodes (class in common) Column (class in datfile) combine (module) combine() (in module analyze) command_script() (in module common) common (module)

compare (module) compare() (in module checkpoint) (in module parameters) compare_dicts() (in module common) compare_lists() (in module common) contour() (in module plot) contourf() (in module plot) convert() (in module plot) convolution (module) coulomb() (grid.PrecalculatedMesh method) create_colorbar_axes() (in module plot) create_image_data() (in module vtkutils) create_image_data_from_array() (in module vtkutils) create_panel() (in module analyze) create_random_distance_transform_on_skeleton() (in module modify) create_zeros() (grid.Grid method) crop() (in module plot) curves (module)

D

dat() (in module find) datfile (module) dats() (in module find) default (datfile.Column attribute) (parameters.Parameter attribute) depth() (in module find) derivative() (fit.Fit method) (fit.FitCos method) (fit.FitLinear method) (fit.FitLinearZero method) (fit.FitLog method) (fit.FitQuadratic method) (fit.FitQuadraticZero method) (fit.FitSin method) (fit.FitTanh method) (fit.FitXTanh method)

dialate() (in module modify) disk_structure() (in module ga_analyze) distances() (grid.PrecalculatedMesh method) diversity_check() (in module ga) dla (module) done (module)

E

enlarge() (in module modify) equil (module) equilibrate() (in module analyze) erode() (in module modify)

errorbar() (in module plot) extend (module) extract_system() (in module find)

F

f_bandXY() (in module surface) f_bandXZ() (in module surface) f_bandYZ() (in module surface) f_gyroid() (in module surface) f_isotropic() (in module surface) f_scherk_first_surface() (in module surface) f_schwarz_d_surface() (in module surface) f_schwarz_p_surface() (in module surface) fake_alpha() (in module plot) fft (module) filter_curvature() (in module vtkutils) filter_marching() (in module vtkutils) filter_marching_cubes() (in module vtkutils) filter_marching_squares() (in module vtkutils) find (module) find() (in module find) Fit (class in fit) fit (module) FitBarycentric (class in fit) FitCos (class in fit) FitErf (class in fit) FitGaussian (class in fit) FitInterp1D (class in fit) FitLagrange (class in fit) FitLinear (class in fit)

FitLinearZero (class in fit) FitLog (class in fit) FitPower (class in fit) FitQuadratic (class in fit) FitQuadraticZero (class in fit) FitSin (class in fit) FitTanh (class in fit) FitUnivariateSpline (class in fit) FitXErf (class in fit) FitXTanh (class in fit) fix() (in module datfile) fix_boolean() (in module regex) fix_colorbar_labels() (in module plot) fix_traps() (checkpoint.CheckPoint method) flip_random_sites() (in module modify) fmt (datfile.Column attribute) (parameters.Parameter attribute) format_output() (in module common) format_string() (in module common) fourier_transform_and_reconstruct() (in module modify) from_checkpoint() (grid.Grid class method) from_dataframe() (ivcurve.IVCurve class method) from_grid() (checkpoint.CheckPoint class method) from_image() (checkpoint.CheckPoint class method) from_panel() (ivcurve.IVCurve class method) FuncKernel (class in surface)

G

ga (module) ga_analyze (module) gather (module) gauss1D() (in module modify) gauss2D() (in module modify) GaussianKernel (class in surface)

gblur_and_threshold() (in module modify) granulometry() (in module ga_analyze) Grid (class in grid) grid (module) grow_ndimage() (in module modify) gyroid() (in module surface)

H

has_key() (checkpoint.CheckPoint method)

I

ideal (module) image2chk (module) IndexMapper (class in grid) indexS() (grid.IndexMapper method) indexX() (grid.IndexMapper method) indexY() (grid.IndexMapper method) indexZ() (grid.IndexMapper method) inp() (in module find) inps() (in module find)

interface_size() (in module ga_analyze) invert() (in module modify) iso (module) Isotropic (class in surface) isotropic (module) IVCurve (class in ivcurve) ivcurve (module) IVCurveSolar (class in ivcurve)

K

Kernel (class in surface)

key (datfile.Column attribute) (parameters.Parameter attribute)

L

linear_mapping() (in module surface) lines (module) load() (checkpoint.CheckPoint method) (in module checkpoint) (in module datfile) (in module parameters) (in module surface) (parameters.Parameters method) load_ascii() (in module surface) load_chk() (in module surface) load_image() (in module ga_analyze)

load_image_data() (in module vtkutils) load_last() (in module checkpoint) load_npy() (in module ga_analyze) load_pkl() (in module common) (ivcurve.IVCurve class method) load_pkls() (in module common) (ivcurve.IVCurve class method)

M

make_3D() (in module surface) makeBlock() (in module block) makeIsotropic() (in module iso) maxbrute() (fit.Fit method) maximize() (fit.Fit method)

maxn_locator() (in module plot) minimize() (fit.Fit method) modify (module) morph (module) multiple_locator() (in module plot)

N

npyToPng (module) number() (in module regex)

numbers() (in module regex)

O

opening() (in module modify)

P

Parameter (class in parameters) Parameters (class in parameters) parameters (module) parameters() (grid.Grid method) parm() (in module find) parms() (in module find) part() (in module find) (in module regex) parts() (in module find) PeakFinder (class in plot) pepper (module) pepper() (in module modify)

pipe() (in module vtkutils) pkl() (in module find) pkls() (in module find) plot (module) plot() (fit.Fit method) plot_tangent() (fit.Fit method) png() (in module find) pngs() (in module find) PrecalculatedMesh (class in grid) pytype (datfile.Column attribute) (parameters.Parameter attribute)

R

randf() (in module modify) RandomKernel (class in surface) rdf (module) rectangle() (in module plot) refine() (grid.Grid method) regex (module)

reset (module) reset() (checkpoint.CheckPoint method) rfunc() (in module surface) roughen() (in module modify) run() (in module find) (in module regex) runs() (in module find)

S

save() (checkpoint.CheckPoint method) (in module plot) (in module surface) (parameters.Parameters method) save_chk() (in module surface) save_csv() (ivcurve.IVCurve method) save_image_data() (in module vtkutils) save_pkl() (in module common) (ivcurve.IVCurve method) save_vti() (in module surface) scale_bars() (in module plot) scan (module) scherk_first_surface() (in module surface) schwarz_d_surface() (in module surface) schwarz_p_surface() (in module surface) scilimits() (in module plot) score() (in module ga) score_filenames() (in module ga) script (module) set_defaults() (parameters.Parameters method) shift_subplots() (in module plot) show() (in module vtkutils) shrink() (in module modify) SimpleKernel (class in surface)

sims() (in module find) skeletonize_and_reconstruct() (in module modify) slice_part() (in module find) slice_path() (in module find) slice_run() (in module find) slice_sim() (in module find) slice_system() (in module find) solar (module) solve() (fit.Fit method) sort() (fit.Fit method) splitext() (in module common) square_structure() (in module ga_analyze) Stats (class in analyze) stats (module) strip_comments() (in module regex) subplots() (in module plot) summary() (fit.Fit method) (fit.FitCos method) (fit.FitErf method) (fit.FitGaussian method) (fit.FitLinear method) (fit.FitLinearZero method) (fit.FitLog method) (fit.FitPower method) (fit.FitQuadratic method) (fit.FitQuadraticZero method) (fit.FitSin method) (fit.FitTanh method) (fit.FitXErf method) (fit.FitXTanh method) (ivcurve.IVCurve method) (ivcurve.IVCurveSolar method) surface (module) systems() (in module find)

T

table (module) tail() (in module common) tangent() (fit.Fit method) text() (fit.Fit method) threshold() (in module modify) (in module surface) to_dataframe() (ivcurve.IVCurve method) to_dict() (analyze.Stats method) (ivcurve.IVCurve method) (parameters.Parameters method) to_ndarray() (parameters.Parameters method) to_series() (ivcurve.IVCurve method) (parameters.Parameters method)

transfer_distance() (in module ga_analyze) transformA() (in module plot) transformX() (in module plot) transformY() (in module plot) triangle (module) tristripe (module) txt() (in module find) txts() (in module find)

U

ublur_and_threshold() (in module modify) units (datfile.Column attribute) (parameters.Parameter attribute)

update() (checkpoint.CheckPoint method)

V

vtkutils (module)

W

WaveDimensions (class in surface)

X

XYZV (class in grid)

Z

zhandle() (in module common)

zoom() (in module plot)